PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010894.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 168aa    MW: 19301.9 Da    PI: 8.0762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010894.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.22.3e-3871211128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              l pG+rF+Ptdeelv +yL++kv +++l++  +i e+ +++k++Pw Lp      + e yfFs+r          +rat sgyWk 
  Itr_sc010894.1_g00001.1   7 LFPGIRFQPTDEELVFHYLHPKVFNSPLPAY-IILEIdNVCKSDPWVLP------DGERYFFSRR---------CSRATLSGYWKP 76 
                              579***************************5.5666659*********9......4689***985.........6799******** PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgkdk++ ++   ++ vg+kktLvfy+g+ap+g+ktdW+mhey+l
  Itr_sc010894.1_g00001.1  77 TGKDKKIAVSgeAQSIVGMKKTLVFYTGKAPNGSKTDWIMHEYSL 121
                              ********98555556***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-475139IPR003441NAC domain
PROSITE profilePS5100546.9097139IPR003441NAC domain
PfamPF023657.2E-269121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDNLSLLFPG IRFQPTDEEL VFHYLHPKVF NSPLPAYIIL EIDNVCKSDP WVLPDGERYF  60
FSRRCSRATL SGYWKPTGKD KKIAVSGEAQ SIVGMKKTLV FYTGKAPNGS KTDWIMHEYS  120
LADAPQPEEN WVLCRIFLKK RGGRNDERSH SSSRDAFHDF FAPERADL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-33714017166NO APICAL MERISTEM PROTEIN
1ut4_B2e-33714017166NO APICAL MERISTEM PROTEIN
1ut7_A2e-33714017166NO APICAL MERISTEM PROTEIN
1ut7_B2e-33714017166NO APICAL MERISTEM PROTEIN
3swm_A2e-33714020169NAC domain-containing protein 19
3swm_B2e-33714020169NAC domain-containing protein 19
3swm_C2e-33714020169NAC domain-containing protein 19
3swm_D2e-33714020169NAC domain-containing protein 19
3swp_A2e-33714020169NAC domain-containing protein 19
3swp_B2e-33714020169NAC domain-containing protein 19
3swp_C2e-33714020169NAC domain-containing protein 19
3swp_D2e-33714020169NAC domain-containing protein 19
4dul_A2e-33714017166NAC domain-containing protein 19
4dul_B2e-33714017166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.16e-59PREDICTED: NAC transcription factor 25
SwissprotQ9FY932e-53NAC83_ARATH; NAC domain-containing protein 83
TrEMBLS5XG869e-57S5XG86_CAMSI; NAC transcription factor
STRINGGLYMA18G53954.13e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-54NAC domain containing protein 83